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Plant and Cell Physiology Advance Access published online on January 17, 2006
Plant and Cell Physiology, doi:10.1093/pcp/pcj005
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Plant and Cell Physiology 2006 © The Japanese Society of Plant Physiologists (JSPP); all rights reserved.
Received November 15, 2005
Accepted January 3, 2006

Short Communication

plprot: A Comprehensive Proteome Database for Different Plastid Types

Torsten Kleffmann 1, Matthias Hirsch-Hoffmann 1, Wilhelm Gruissem 1, and Sacha Baginsky 1 *

1 Institute of Plant Sciences, ETH Zürich, Zürich, Switzerland

* To whom correspondence should be addressed.
Sacha Baginsky, E-mail: sbaginsky{at}ethz.ch


  Abstract

Different plant plastid types contain a distinct protein complement for specialized functions and metabolic activities. plprot was established as a plastid proteome database to provide information about the proteomes of chloroplasts, etioplasts and undifferentiated plastids. The current version of plprot features 2043 protein entries and consists of two modules. Module one contains a BLAST search option and provides comparative information on the proteomes of different plastid types. The second module contains four searchable databases, three for each individual plastid type and one comprehensive composite database that provides the results of plastid proteome analyses from different laboratories. plprot is accessible at http://www.plprot.ethz.ch.

Keywords: plastid differentiation; proteomics; protein database.
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